PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG241000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 175aa    MW: 20624.8 Da    PI: 9.1252
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG241000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.75.8e-1136953190
                 FAR1 31 rtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                         ++  C  +g+ree++ k ++k+r+ ++ tr gC akl++ +++ +g+w+v+++  eHnH ++
  Pavir.3KG241000.1.p 36 EKTIC--QGFREEKELKrENKKRKLQNITRFGCPAKLVIARDQnTGQWHVKDFICEHNHLMV 95
                         55555..5666655544358899999***************999***************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-94095IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MPGAEYNVIV RKVFDDEEEG YEFYNNYAKG KDLVSEKTIC QGFREEKELK RENKKRKLQN  60
ITRFGCPAKL VIARDQNTGQ WHVKDFICEH NHLMVEQDLA CLLRSHRRNR DEQKADIVVM  120
QISGIRKHQI MDIKEMLYGG YDKIGFTRRD LYISIIAIRW TQWLLAMLKQ SPVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14856LKRENKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466896.12e-62hypothetical protein SORBIDRAFT_01g016055, partial
RefseqXP_002466969.12e-64hypothetical protein SORBIDRAFT_01g017605, partial
TrEMBLC5WUC02e-62C5WUC0_SORBI; Putative uncharacterized protein Sb01g016055 (Fragment)
TrEMBLC5WWC03e-64C5WWC0_SORBI; Putative uncharacterized protein Sb01g017605 (Fragment)
STRINGSb01g016055.16e-62(Sorghum bicolor)
STRINGSb01g017605.18e-64(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-15FAR1-related sequence 5